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Post-ADC Inference: Valid Inference After Active Data Collection

arXiv.org Machine Learning

The validity of statistical inference depends critically on how data are collected. When data gathered through active data collection (ADC) are reused for a post-hoc inferential task, conventional inference can fail because the sampling is adaptively biased toward regions favored by the collection strategy. This issue is especially pronounced in black-box optimization, where sequential model-based optimization (SMBO) methods such as the tree-structured Parzen estimator (TPE) and Gaussian process upper confidence bound (GP-UCB) preferentially concentrate evaluations in promising regions. We study statistical inference on actively collected data when the inferential target is constructed in a data-dependent manner after data collection. To enable valid inference in this setting, we propose post-ADC inference, a framework that accounts for the biases arising from both the active data collection process and the subsequent data-driven target construction. Our method builds on selective inference and provides valid $p$-values and confidence intervals that correct for both sources of bias. The framework applies to a broad class of ADC processes by imposing only assumptions on the observation noise, without requiring any assumptions on the underlying black-box function or the surrogate model used by the SMBO algorithm. Empirical results also show that post-ADC inference provides valid inference for data collected by GP-UCB and TPE.


Deep Adaptive Model-Based Design of Experiments

arXiv.org Machine Learning

Model-based design of experiments (MBDOE) is essential for efficient parameter estimation in nonlinear dynamical systems. However, conventional adaptive MBDOE requires costly posterior inference and design optimization between each experimental step, precluding real-time applications. We address this by combining Deep Adaptive Design (DAD), which amortizes sequential design into a neural network policy trained offline, with differentiable mechanistic models. For dynamical systems with known governing equations but uncertain parameters, we extend sequential contrastive training objectives to handle nuisance parameters and propose a transformer-based policy architecture that respects the temporal structure of dynamical systems. We demonstrate the approach on four systems of increasing complexity: a fed-batch bioreactor with Monod kinetics, a Haldane bioreactor with uncertain substrate inhibition, a two-compartment pharmacokinetic model with nuisance clearance parameters, and a DC motor for real-time deployment.


Unveiling the Potential of Robustness in Selecting Conditional Average Treatment Effect Estimators

Neural Information Processing Systems

The growing demand for personalized decision-making has led to a surge of interest in estimating the Conditional Average Treatment Effect (CATE). Various types of CATE estimators have been developed with advancements in machine learning and causal inference. However, selecting the desirable CATE estimator through a conventional model validation procedure remains impractical due to the absence of counterfactual outcomes in observational data.




Conditional Outcome Equivalence: A Quantile Alternative to CATE

Neural Information Processing Systems

The conditional quantile treatment effect (CQTE) can provide insight into the effect of a treatment beyond the conditional average treatment effect (CA TE). This ability to provide information over multiple quantiles of the response makes the CQTE especially valuable in cases where the effect of a treatment is not well-modelled by a location shift, even conditionally on the covariates. Nevertheless, the estimation of the CQTE is challenging and often depends upon the smoothness of the individual quantiles as a function of the covariates rather than smoothness of the CQTE itself. This is in stark contrast to the CA TE where it is possible to obtain high-quality estimates which have less dependency upon the smoothness of the nuisance parameters when the CA TE itself is smooth. Moreover, relative smoothness of the CQTE lacks the interpretability of smoothness of the CA TE making it less clear whether it is a reasonable assumption to make.



Direct Doubly Robust Estimation of Conditional Quantile Contrasts

arXiv.org Machine Learning

Within heterogeneous treatment effect (HTE) analysis, various estimands have been proposed to capture the effect of a treatment conditional on covariates. Recently, the conditional quantile comparator (CQC) has emerged as a promising estimand, offering quantile-level summaries akin to the conditional quantile treatment effect (CQTE) while preserving some interpretability of the conditional average treatment effect (CATE). It achieves this by summarising the treated response conditional on both the covariates and the untreated response. Despite these desirable properties, the CQC's current estimation is limited by the need to first estimate the difference in conditional cumulative distribution functions and then invert it. This inversion obscures the CQC estimate, hampering our ability to both model and interpret it. To address this, we propose the first direct estimator of the CQC, allowing for explicit modelling and parameterisation. This explicit parameterisation enables better interpretation of our estimate while also providing a means to constrain and inform the model. We show, both theoretically and empirically, that our estimation error depends directly on the complexity of the CQC itself, improving upon the existing estimation procedure. Furthermore, it retains the desirable double robustness property with respect to nuisance parameter estimation. We further show our method to outperform existing procedures in estimation accuracy across multiple data scenarios while varying sample size and nuisance error. Finally, we apply it to real-world data from an employment scheme, uncovering a reduced range of potential earnings improvement as participant age increases.


Machine Learning-based Unfolding for Cross Section Measurements in the Presence of Nuisance Parameters

arXiv.org Machine Learning

Statistically correcting measured cross sections for detector effects is an important step across many applications. In particle physics, this inverse problem is known as \textit{unfolding}. In cases with complex instruments, the distortions they introduce are often known only implicitly through simulations of the detector. Modern machine learning has enabled efficient simulation-based approaches for unfolding high-dimensional data. Among these, one of the first methods successfully deployed on experimental data is the \textsc{OmniFold} algorithm, a classifier-based Expectation-Maximization procedure. In practice, however, the forward model is only approximately specified, and the corresponding uncertainty is encoded through nuisance parameters. Building on the well-studied \textsc{OmniFold} algorithm, we show how to extend machine learning-based unfolding to incorporate nuisance parameters. Our new algorithm, called Profile \textsc{OmniFold}, is demonstrated using a Gaussian example as well as a particle physics case study using simulated data from the CMS Experiment at the Large Hadron Collider.